#include "common.h"
#include <cstdlib>
#include <iostream>
#include <iomanip>
#include <cmath>
#include <vector>
#include <sstream>
#include <ctime>
#include "grid.h"
#include "vlasovsolver/vlasovmover.h"
#include "definitions.h"
#include "mpiconversion.h"
#include "logger.h"
#include "parameters.h"
#include "datareduction/datareducer.h"
#include "sysboundary/sysboundary.h"
#include "fieldsolver/fs_common.h"
#include "fieldsolver/gridGlue.hpp"
#include "fieldsolver/derivatives.hpp"
#include "vlasovsolver/cpu_trans_pencils.hpp"
#include "projects/project.h"
#include "iowrite.h"
#include "ioread.h"
#include "object_wrapper.h"
#include "memory_report.h"

Include dependency graph for grid.cpp:

Functions
void	initVelocityGridGeometry (dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid)
void	initSpatialCellCoordinates (dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid)
void	initializeStencils (dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid)
void	writeVelMesh (const dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid)
void	initializeGrids (int argn, char **argc, dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid, fsgrid::FsData< std::array< Real, fsgrids::bfield::N_BFIELD > > &perb, fsgrid::FsData< std::array< Real, fsgrids::bgbfield::N_BGB > > &bgb, fsgrid::FsData< std::array< Real, fsgrids::moments::N_MOMENTS > > &moments, fsgrid::FsData< std::array< Real, fsgrids::moments::N_MOMENTS > > &momentsdt2, fsgrid::FsData< std::array< Real, fsgrids::dmoments::N_DMOMENTS > > &dmoments, fsgrid::FsData< std::array< Real, fsgrids::efield::N_EFIELD > > &e, fsgrid::FsData< std::array< Real, fsgrids::egradpe::N_EGRADPE > > &egradpe, fsgrid::FsData< std::array< Real, fsgrids::volfields::N_VOL > > &vol, fsgrid::FsData< fsgrids::technical > &technical, FieldSolverGrid &fsgrid, SysBoundary &sysBoundaries, Project &project)
	Initialize DCCRG and fsgrids.
void	setFaceNeighborRanks (dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid)
uint64_t	get_transfer_part (dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid, uint64_t num_part_transfers, CellID cell)
void	transferInParts (dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid, std::vector< CellID > &incoming_cells_list, std::vector< CellID > &outgoing_cells_list, bool refinement=false)
void	balanceLoad (dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid, SysBoundary &sysBoundaries, fsgrids::technicalspan technical, FieldSolverGrid &fsgrid, bool doTranslationLists)
	Balance load.
void	prepareAMRLists (dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid)
bool	adjustVelocityBlocks (dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid, const vector< CellID > &cellsToAdjust, bool doPrepareToReceiveBlocks, const uint popID)
void	shrink_to_fit_grid_data (dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid)
void	deallocateRemoteCellBlocks (dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid)
void	updateRemoteVelocityBlockLists (dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid, const uint popID, const uint neighborhood)
void	mapRefinement (dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid, fsgrids::technicalspan technical, FieldSolverGrid &fsgrid)
bool	adaptRefinement (dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid, fsgrids::technicalspan technical, FieldSolverGrid &fsgrid, SysBoundary &sysBoundaries, Project &project, int useStatic)
void	recalculateLocalCellsCache (const dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid)

Variables
Logger	logFile

Function Documentation

◆ adaptRefinement()

bool adaptRefinement	(	dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &	mpiGrid,
		fsgrids::technicalspan	technical,
		FieldSolverGrid &	fsgrid,
		SysBoundary &	sysBoundaries,
		Project &	project,
		int	useStatic = -1 )

Refine spatial cells and update necessary information

Parameters

mpiGrid	Spatial grid
fsgrid	Technical grid
sysBoundaries	System boundaries
project	Project used
useStatic	Used for forcing static refinement on restart. Negative values use adaptive refinement, non-negative values correspond to static refinement pass in Project::forceRefinement

Definition at line 1337 of file grid.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ adjustVelocityBlocks()

bool adjustVelocityBlocks	(	dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &	mpiGrid,
		const vector< CellID > &	cellsToAdjust,
		bool	doPrepareToReceiveBlocks,
		const uint	popID )

Definition at line 830 of file grid.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ balanceLoad()

void balanceLoad	(	dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &	mpiGrid,
		SysBoundary &	sysBoundaries,
		fsgrids::technicalspan	technical,
		FieldSolverGrid &	fsgrid,
		bool	doTranslationLists = true )

Balance load.

Parameters

[in,out] mpiGrid The DCCRG grid with spatial cells

Definition at line 672 of file grid.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ deallocateRemoteCellBlocks()

void deallocateRemoteCellBlocks ( dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > & mpiGrid )

Deallocates all block data in remote cells in order to save memory

Parameters

mpiGrid Spatial grid

Definition at line 902 of file grid.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ get_transfer_part()

uint64_t get_transfer_part	(	dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &	mpiGrid,
		uint64_t	num_part_transfers,
		CellID	cell )

inline

Definition at line 483 of file grid.cpp.

Here is the caller graph for this function:

◆ initializeGrids()

void initializeGrids	(	int	argn,
		char **	argc,
		dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &	mpiGrid,
		fsgrid::FsData< std::array< Real, fsgrids::bfield::N_BFIELD > > &	perb,
		fsgrid::FsData< std::array< Real, fsgrids::bgbfield::N_BGB > > &	bgb,
		fsgrid::FsData< std::array< Real, fsgrids::moments::N_MOMENTS > > &	moments,
		fsgrid::FsData< std::array< Real, fsgrids::moments::N_MOMENTS > > &	momentsdt2,
		fsgrid::FsData< std::array< Real, fsgrids::dmoments::N_DMOMENTS > > &	dmoments,
		fsgrid::FsData< std::array< Real, fsgrids::efield::N_EFIELD > > &	e,
		fsgrid::FsData< std::array< Real, fsgrids::egradpe::N_EGRADPE > > &	egradpe,
		fsgrid::FsData< std::array< Real, fsgrids::volfields::N_VOL > > &	vol,
		fsgrid::FsData< fsgrids::technical > &	technical,
		FieldSolverGrid &	fsgrid,
		SysBoundary &	sysBoundaries,
		Project &	project )

Initialize DCCRG and fsgrids.

Definition at line 92 of file grid.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ initializeStencils()

void initializeStencils ( dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > & mpiGrid )

Definition at line 1037 of file grid.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ initSpatialCellCoordinates()

void initSpatialCellCoordinates ( dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > & mpiGrid )

Definition at line 411 of file grid.cpp.

Here is the caller graph for this function:

◆ initVelocityGridGeometry()

void initVelocityGridGeometry ( dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > & mpiGrid )

◆ mapRefinement()

void mapRefinement	(	dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &	mpiGrid,
		fsgrids::technicalspan	technical,
		FieldSolverGrid &	fsgrid )

Map grid refinement to FsGrid

Definition at line 1322 of file grid.cpp.

Here is the caller graph for this function:

◆ prepareAMRLists()

void prepareAMRLists ( dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > & mpiGrid )

Definition at line 797 of file grid.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ recalculateLocalCellsCache()

void recalculateLocalCellsCache ( const dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > & mpiGrid )

Definition at line 1486 of file grid.cpp.

Here is the caller graph for this function:

◆ setFaceNeighborRanks()

void setFaceNeighborRanks ( dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > & mpiGrid )

Definition at line 433 of file grid.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ shrink_to_fit_grid_data()

void shrink_to_fit_grid_data ( dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > & mpiGrid )

Shrink to fit velocity space data to save memory.

Parameters

mpiGrid Spatial grid

Definition at line 874 of file grid.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ transferInParts()

void transferInParts	(	dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &	mpiGrid,
		std::vector< CellID > &	incoming_cells_list,
		std::vector< CellID > &	outgoing_cells_list,
		bool	refinement = false )

Definition at line 490 of file grid.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ updateRemoteVelocityBlockLists()

void updateRemoteVelocityBlockLists	(	dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > &	mpiGrid,
		const uint	popID,
		const uint	neighborhood = Neighborhoods::DIST_FUNC )

Updates velocity block lists between remote neighbors and prepares local copies of remote neighbors to receive velocity block data. This is needed if one has locally adjusted velocity blocks

Parameters

mpiGrid The DCCRG grid with spatial cells

Definition at line 919 of file grid.cpp.

Here is the call graph for this function:

Here is the caller graph for this function:

◆ writeVelMesh()

void writeVelMesh ( const dccrg::Dccrg< SpatialCell, dccrg::Cartesian_Geometry > & mpiGrid )

Definition at line 73 of file grid.cpp.

Here is the call graph for this function:

Variable Documentation

◆ logFile

Logger logFile

extern

Definition at line 25 of file main.cpp.

Functions

Variables

Function Documentation

◆ adaptRefinement()

◆ adjustVelocityBlocks()

◆ balanceLoad()

◆ deallocateRemoteCellBlocks()

◆ get_transfer_part()

◆ initializeGrids()

◆ initializeStencils()

◆ initSpatialCellCoordinates()

◆ initVelocityGridGeometry()

◆ mapRefinement()

◆ prepareAMRLists()

◆ recalculateLocalCellsCache()

◆ setFaceNeighborRanks()

◆ shrink_to_fit_grid_data()

◆ transferInParts()

◆ updateRemoteVelocityBlockLists()

◆ writeVelMesh()

Variable Documentation

◆ logFile