#include <Diffusion.h>

Inheritance diagram for projects::Diffusion:

Collaboration diagram for projects::Diffusion:

Public Member Functions
	Diffusion ()
virtual	~Diffusion ()
virtual bool	initialize (void) override
virtual void	getParameters (void) override
virtual void	setProjectBField (fsgrids::perbspan perb, fsgrids::bgbspan bgb, fsgrids::technicalspan technical, FieldSolverGrid &fsgrid) override
virtual Realf	fillPhaseSpace (spatial_cell::SpatialCell *cell, const uint popID, const uint nRequested) const override
virtual void	calcCellParameters (spatial_cell::SpatialCell *cell, creal &t) override
Public Member Functions inherited from projects::Project
	Project ()
virtual	~Project ()
virtual Real	getCorrectNumberDensity (spatial_cell::SpatialCell *cell, const uint popID) const
virtual void	hook (cuint &stage, const dccrg::Dccrg< spatial_cell::SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid, fsgrids::perbspan perb, fsgrids::technicalspan technical, FieldSolverGrid &fsgrid) const
bool	initialized ()
virtual void	setupBeforeSetCell (const std::vector< CellID > &cells)
void	setCell (spatial_cell::SpatialCell *cell)
	Set the perturbed fields and distribution of a cell according to the default simulation settings. This is used for the NOT_SYSBOUNDARY cells and some other system boundary conditions (e.g. Outflow).
virtual bool	canRefine (spatial_cell::SpatialCell *cell) const
virtual bool	shouldRefineCell (dccrg::Dccrg< spatial_cell::SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid, CellID id, Real r_max2) const
virtual bool	shouldUnrefineCell (dccrg::Dccrg< spatial_cell::SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid, CellID id, Real r_max2) const
virtual bool	refineSpatialCells (dccrg::Dccrg< spatial_cell::SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid) const
virtual uint64_t	adaptRefinement (dccrg::Dccrg< spatial_cell::SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid) const
	Adapts refinement by one level according to the project. Returns true if any cells were refined, false if not.
virtual bool	forceRefinement (dccrg::Dccrg< spatial_cell::SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid, int n) const
	Refine/unrefine spatial cells one level to the static criteria in the config.
virtual bool	filterRefined (dccrg::Dccrg< spatial_cell::SpatialCell, dccrg::Cartesian_Geometry > &mpiGrid) const
	Boxcar filters spatial cells that were recently refined.

Static Public Member Functions
static void	addParameters (void)
Static Public Member Functions inherited from projects::Project
static void	addParameters ()

Public Attributes
Real	B0
std::vector< DiffusionSpeciesParameters >	speciesParams

Additional Inherited Members
Protected Member Functions inherited from projects::Project
virtual uint	findBlocksToInitialize (spatial_cell::SpatialCell *cell, const uint popID) const
	Prepares a list of blocks to loop through when initialising.
void	setVelocitySpace (const uint popID, spatial_cell::SpatialCell *cell) const
	Sets the distribution function in a cell.
void	printPopulations ()
virtual bool	rescalesDensity (const uint popID) const
void	rescaleDensity (spatial_cell::SpatialCell *cell, const uint popID) const
Real	getRandomNumber (std::default_random_engine &randGen) const
void	setRandomSeed (uint64_t seedModifier, std::default_random_engine &randGen) const
void	setRandomCellSeed (spatial_cell::SpatialCell *cell, std::default_random_engine &randGen) const

Detailed Description

Definition at line 38 of file Diffusion.h.

Constructor & Destructor Documentation

◆ Diffusion()

projects::Diffusion::Diffusion ( )

Definition at line 39 of file Diffusion.cpp.

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◆ ~Diffusion()

projects::Diffusion::~Diffusion ( )

virtual

Definition at line 40 of file Diffusion.cpp.

Member Function Documentation

◆ addParameters()

void projects::Diffusion::addParameters ( void )

static

Definition at line 46 of file Diffusion.cpp.

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◆ calcCellParameters()

void projects::Diffusion::calcCellParameters	(	spatial_cell::SpatialCell *	cell,
		creal &	t )

overridevirtual

Calculate potentially needed parameters for the given spatial cell at the given time.

Currently this function is only called during initialization.

The following array indices contain the coordinates of the "lower left corner" of the cell: CellParams::XCRD, CellParams::YCRD, and CellParams::ZCRD. The cell size is given in the following array indices: CellParams::DX, CellParams::DY, and CellParams::DZ.

Parameters

cell	Pointer to the spatial cell to be handled.
t	The current value of time. This is passed as a convenience. If you need more detailed information of the state of the simulation, you can read it from Parameters.

Print a warning message to stderr and abort, one should not use the base class functions.

Reimplemented from projects::Project.

Definition at line 139 of file Diffusion.cpp.

◆ fillPhaseSpace()

Realf projects::Diffusion::fillPhaseSpace	(	spatial_cell::SpatialCell *	cell,
		const uint	popID,
		const uint	nRequested ) const

overridevirtual

Calculates the distribution function contents for the spatial cell and population in question NOTE: This function is called inside parallel region so it must be declared as const. This function will contain a loop over nRequested velocity blocks, with the block GlobalIDs provided in the GIDlist buffer, storing phase-space densities in the bufferData buffer.

Parameters

popID Particle species ID.

Returns: The total stored number density of the cell for this population The physical unit of this quantity is 1/m^3.

Implements projects::Project.

Definition at line 81 of file Diffusion.cpp.

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◆ getParameters()

void projects::Diffusion::getParameters ( void )

overridevirtual

Get the value that was read in.

Reimplemented from projects::Project.

Definition at line 61 of file Diffusion.cpp.

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◆ initialize()

bool projects::Diffusion::initialize ( void )

overridevirtual

Initialize project. Can be used, e.g., to read in parameters from the input file.

Initialize the Project. Velocity mesh and particle population parameters are read from the configuration file, and corresponding internal variables are created here. NOTE: Each project must call this function!

Returns: If true, particle species and velocity meshes were created successfully.

Reimplemented from projects::Project.

Definition at line 42 of file Diffusion.cpp.

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◆ setProjectBField()

void projects::Diffusion::setProjectBField	(	fsgrids::perbspan	perb,
		fsgrids::bgbspan	bgb,
		fsgrids::technicalspan	technical,
		FieldSolverGrid &	fsgrid )

overridevirtual

set background field, should set it for all cells

Reimplemented from projects::Project.

Definition at line 141 of file Diffusion.cpp.

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Member Data Documentation

◆ B0

Real projects::Diffusion::B0

Definition at line 59 of file Diffusion.h.

◆ speciesParams

std::vector<DiffusionSpeciesParameters> projects::Diffusion::speciesParams

Definition at line 60 of file Diffusion.h.

The documentation for this class was generated from the following files:

projects/Diffusion/Diffusion.h
projects/Diffusion/Diffusion.cpp

Public Member Functions

Static Public Member Functions

Public Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ Diffusion()

◆ ~Diffusion()

Member Function Documentation

◆ addParameters()

◆ calcCellParameters()

◆ fillPhaseSpace()

◆ getParameters()

◆ initialize()

◆ setProjectBField()

Member Data Documentation

◆ B0

◆ speciesParams